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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12345094_12346043_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12345094 - 12346043
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGTTT
5'SS Class:
major
3'SS Sequence:
TCAATTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTTTTCTCAATT
Flanking Amino Acid:
SAAERIRDSKKRSKQRKLQQ
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
75.6
34.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
72.1
0.5
1.1
68.9
41.6
Minor 5ss
43.7
-0.7
3.5
64.1
41.9
Minor BPS
70.8
0.73
1.5
84.72
35.8

Associated Gene:

Gene:
FAM199X
Ensembl Gene ID:
ENSAPLG00000012865
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013392
12334269 - 12346214
11946