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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12379258_12379343_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12379258 - 12379343
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
CTGCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
AGGCGGCTAACG
Flanking Amino Acid:
RKSHYPDVFTREELAGRLEL
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
68.6
0.42
0.8
61.9
28.8
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
36.6
-1.1
2.4
40.7
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030241
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037258
12372718 - 12379597
6880