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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12389227_12389958_F

Intron Information:

Intron Rank:
135707
Intron Class:
major
Intron Phase:
Intron Coordinates:
12389227 - 12389958
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACTCG
5'SS Class:
major
3'SS Sequence:
GGTGTCTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
GTGCACTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
61.7
39.6
Major BPS
69
0.47
1
69.9
32.6
Major PPT
72.3
0.5
0.9
65.3
41.2
Minor 5ss
38.1
-1.3
3
47.6
48
Minor BPS
51.6
-0
1.7
56.51
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023040
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045932
12388558 - 12401707
13150