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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12402421_12411039_F

Intron Information:

Intron Rank:
135705
Intron Class:
major
Intron Phase:
Intron Coordinates:
12402421 - 12411039
Intron Length:
8619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACTGACTAGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.7
33.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
47.6
-0.1
2
65.96
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023040
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031338
12389833 - 12413655
23823