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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12409880_12411039_F

Intron Information:

Intron Rank:
135700
Intron Class:
major
Intron Phase:
Intron Coordinates:
12409880 - 12411039
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTCCA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACTGACTAGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.2
39.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
34.7
-1.7
2.8
39.7
40.6
Minor BPS
47.6
-0.1
2
65.96
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023040
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021694
12409798 - 12415257
5460