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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12411178_12413449_F

Intron Information:

Intron Rank:
135701
Intron Class:
major
Intron Phase:
Intron Coordinates:
12411178 - 12413449
Intron Length:
2272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
AAAGTCATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
85.8
30.3
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
39.7
-1.2
2.8
53.7
36.8
Minor BPS
49.8
0.06
1.7
65.04
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023040
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031338
12389833 - 12413655
23823
ENSAPLT00000021694
12409798 - 12415257
5460