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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12413518_12414430_F

Intron Information:

Intron Rank:
135702
Intron Class:
major
Intron Phase:
Intron Coordinates:
12413518 - 12414430
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAT
U12 Branch Point Sequence:
TGTGTCCCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
54.5
0.11
1.4
66.4
42.2
Major PPT
76.4
0.59
0.9
66.6
39.3
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
40.5
-0.7
2
51.43
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023040
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021694
12409798 - 12415257
5460