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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12414488_12439125_F

Intron Information:

Intron Rank:
135699
Intron Class:
major
Intron Phase:
Intron Coordinates:
12414488 - 12439125
Intron Length:
24638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAAA
5'SS Class:
major
3'SS Sequence:
TTATTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
77.1
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85
0.79
0.7
81.8
29.9
Minor 5ss
37.5
-1.4
2.4
42.6
44.3
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023040
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020870
12414255 - 12439440
25186