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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1245596_1246062_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1245596 - 1246062
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTGTGAGG
5'SS Class:
major
3'SS Sequence:
ACCCCCCAGACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTGCAAT
U12 Branch Point Sequence:
ACTCCTGCGACC
Flanking Amino Acid:
EPAGLCRTSASNYNTSPKST
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.3
52.8
44.3
Major BPS
47.6
-0.1
1.5
56.5
46.9
Major PPT
55.7
0.13
1
50
32.5
Minor 5ss
16.4
-3.9
3.5
22.8
36.9
Minor BPS
42.9
-0.5
2.1
53.29
38.7

Associated Gene:

Gene:
FAM155B
Ensembl Gene ID:
ENSAPLG00000008456
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008776
1234744 - 1246381
11638