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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12468158_12626571_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12468158 - 12626571
Intron Length:
158414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATGTCTTTATTA
Flanking Amino Acid:
NLKLVSKRNSVDGCIDWSVD
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.5
0.78
0.8
81.2
36.5
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
62.4
0.39
1.5
69.12
38

Associated Gene:

Gene:
IL1RAPL2
Ensembl Gene ID:
ENSAPLG00000012903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013430
12468057 - 12792372
324316