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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12647335_12697658_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12647335 - 12697658
Intron Length:
50324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCCATTACG
Flanking Amino Acid:
IRRTVELKVTALLTDKPPKP
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
64.1
0.3
2
77.11
39.8

Associated Gene:

Gene:
IL1RAPL2
Ensembl Gene ID:
ENSAPLG00000012903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013430
12468057 - 12792372
324316