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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12697734_12766818_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12697734 - 12766818
Intron Length:
69085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
ATGTGTCTAACC
Flanking Amino Acid:
NQPTVIDVQLGNPLTVACKA
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.7
41.3
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
85.5
0.8
0.7
84.9
29.9
Minor 5ss
35
-1.7
2.8
37.9
39.5
Minor BPS
49.5
-0
2.1
65.07
40.8

Associated Gene:

Gene:
IL1RAPL2
Ensembl Gene ID:
ENSAPLG00000012903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013430
12468057 - 12792372
324316