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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12766949_12773014_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12766949 - 12773014
Intron Length:
6066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTTT
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTCAGC
Flanking Amino Acid:
LEGHIREGEIRLLREHLGEK
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.9
34.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
45.1
-0.5
3.1
67.5
43.4
Minor BPS
49.3
-0
2.3
68.72
42.5

Associated Gene:

Gene:
IL1RAPL2
Ensembl Gene ID:
ENSAPLG00000012903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013430
12468057 - 12792372
324316