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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12782673_12791674_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12782673 - 12791674
Intron Length:
9002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTATAATTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTATAATT
Flanking Amino Acid:
IPDRDLIPSGTYIEDLTRCV
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.5
0.51
0.9
66.5
39.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
68.9
0.67
1.6
84.42
36.8

Associated Gene:

Gene:
IL1RAPL2
Ensembl Gene ID:
ENSAPLG00000012903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013430
12468057 - 12792372
324316