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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12838125_12844167_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12838125 - 12844167
Intron Length:
6043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
GTCTCCTAAAGA
Flanking Amino Acid:
MNVTENEEEEIKLEI
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
82.2
0.72
0.8
76.8
31.8
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
56
0.18
2
67.6
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416