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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12845189_12846893_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12845189 - 12846893
Intron Length:
1705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GCCTTTTTATTT
Flanking Amino Acid:
IAYICREVLRGLAHLHAHHV
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.8
38.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.6
89.7
25.5
Minor 5ss
36
-1.6
2.9
40.9
45.4
Minor BPS
51.5
0.12
1.6
63.03
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416