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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12846985_12848890_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12846985 - 12848890
Intron Length:
1906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGGCTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CATTCATTAATT
Flanking Amino Acid:
LLTENAEVKLVDFGVSAQLD
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
76.4
0.59
0.9
73.4
37.1
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
70.6
0.73
1.6
82.44
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416