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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12849022_12851790_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12849022 - 12851790
Intron Length:
2769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
ENPDSTYDYRSDLWSLGITA
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79
35.3
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
39.9
-1.1
3.4
54.7
43.6
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416