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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12854004_12854661_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12854004 - 12854661
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
TTTGGCACACCC
Flanking Amino Acid:
NPPPKLKSRKWSKKFLNFVE
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.4
40.1
Major BPS
50
0
1.5
63.1
44.5
Major PPT
82.9
0.74
0.9
80.3
37.3
Minor 5ss
31.8
-2.1
3.1
36.7
42.5
Minor BPS
40.7
-0.7
2.3
59.34
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416