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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12854838_12856597_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12854838 - 12856597
Intron Length:
1760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
DRTRKKKGEREETDYDYSGS
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
63.4
43.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
42.9
-0.8
2.9
56.6
47.5
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416