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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12858301_12859075_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12858301 - 12859075
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTCAC
U12 Branch Point Sequence:
TTCTCTCTGAGG
Flanking Amino Acid:
DGQRKSEKKQKKVEDVQHNK
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
57.1
0.18
1.3
63.1
44.5
Major PPT
87.1
0.83
0.8
84.6
30.3
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
47.9
-0.3
2
58.75
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416