About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12859241_12862599_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12859241 - 12862599
Intron Length:
3359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAACT
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTCAT
U12 Branch Point Sequence:
TGGCACGTCATG
Flanking Amino Acid:
HPPPSNAGKEAEDRRKRSDG
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
69.2
41.5
Major BPS
63.4
0.33
1.2
65.3
41.5
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
40.6
-1.1
3.2
59.4
44.7
Minor BPS
37.6
-1.1
2.3
42.19
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416