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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12870912_12873005_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12870912 - 12873005
Intron Length:
2094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTCCC
5'SS Class:
major
3'SS Sequence:
AAATTTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGGAA
U12 Branch Point Sequence:
AATTTTTTACAG
Flanking Amino Acid:
GSHQSGRPTSGNPGAAKGEN
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.7
37.5
Major BPS
48.3
-0.1
1.3
47.1
37.9
Major PPT
79.6
0.67
0.9
73.1
41
Minor 5ss
30.1
-2.3
2.7
36.9
40.1
Minor BPS
49.3
-0.1
1.7
55.49
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416