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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12873104_12873409_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12873104 - 12873409
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTGAGG
Flanking Amino Acid:
EKVSHPGQVESPVSFAKGKD
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.5
0.8
0.8
84.7
30.2
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
53.2
-0
2
63.62
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416