About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12876426_12879127_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12876426 - 12879127
Intron Length:
2702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGGACTTTAATC
Flanking Amino Acid:
KPQSTTAEQKDQILGKQISS
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.8
0.63
0.9
72.5
36.7
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
66.1
0.48
1.3
67.58
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416