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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12879302_12879954_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12879302 - 12879954
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCATCCTGAAGC
Flanking Amino Acid:
QEPQNKSVNKTPSTESTPSK
Intron Amino Acid Position:
780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.8
31.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.8
0.67
0.8
74.8
34.7
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
59.6
0.28
1.8
68.12
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416