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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12883809_12885759_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12883809 - 12885759
Intron Length:
1951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTTCTTGTATT
Flanking Amino Acid:
DLEGCVHYKVVKYERIKFLV
Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.8
35.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
83
0.74
0.9
76.7
36.2
Minor 5ss
39.5
-1.2
3.3
53.8
44.4
Minor BPS
56.6
0.29
1.8
76.12
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416