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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12885861_12886392_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12885861 - 12886392
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATTAT
U12 Branch Point Sequence:
TGTTCTATAGTG
Flanking Amino Acid:
KPYHKFMAFKSFTSLHHKPL
Intron Amino Acid Position:
1003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
54.4
0.11
1.4
48
45.4
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
49.6
-0.1
1.9
60.99
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416