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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12890468_12899450_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12890468 - 12899450
Intron Length:
8983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AATTTTTTAACT
Flanking Amino Acid:
LQWGEMPASVAYLQSNQVMG
Intron Amino Acid Position:
1106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
45.4
-0.5
2.5
59.2
45.4
Minor BPS
79.4
1
1
87.09
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013205
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013846
12838110 - 12900525
62416