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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12910279_12910604_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12910279 - 12910604
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGGG
5'SS Class:
major
3'SS Sequence:
TCTTTAATGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CCCTCTTTAATG
Flanking Amino Acid:
EKPPEKVDVDVSKLTSLGHL
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
62.2
42.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75
0.56
1
74.6
39
Minor 5ss
31.6
-2.1
3.2
37.3
42.5
Minor BPS
63.6
0.29
1.4
57.98
44.9

Associated Gene:

Gene:
RADX
Ensembl Gene ID:
ENSAPLG00000013841
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014429
12905587 - 12931585
25999