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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12916125_12916218_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12916125 - 12916218
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTTTGTA
5'SS Class:
major
3'SS Sequence:
TTTGTTTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATA
Flanking Amino Acid:
VGRIERARKREHSEDFWLYR
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
68.1
36.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.6
0.69
0.9
76.6
36.7
Minor 5ss
38.8
-1.3
3
50.3
46
Minor BPS
87.5
1.17
0.8
90.77
23.3

Associated Gene:

Gene:
RADX
Ensembl Gene ID:
ENSAPLG00000013841
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014429
12905587 - 12931585
25999