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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12919040_12919600_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12919040 - 12919600
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTCCTTAAAA
Flanking Amino Acid:
SFLKYCKSNKVESVLKAIGE
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.4
0.8
0.8
80.3
31.2
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
83.5
1.05
1.2
87.6
29.2

Associated Gene:

Gene:
RADX
Ensembl Gene ID:
ENSAPLG00000013841
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014429
12905587 - 12931585
25999