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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12948974_12962300_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12948974 - 12962300
Intron Length:
13327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAG
U12 Branch Point Sequence:
TGAGCATGGATT
Flanking Amino Acid:
GNDVLPMSHVGTGDTVAIMI
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.7
38.7
Major BPS
50.8
0.02
1.4
49.1
38
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
25.8
-2.8
3.2
33.5
42
Minor BPS
45.9
-0.2
1.8
62.53
41.4

Associated Gene:

Gene:
RNF128
Ensembl Gene ID:
ENSAPLG00000014254
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014859
12948538 - 12975224
26687