About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12962549_12968736_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12962549 - 12968736
Intron Length:
6188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTTTCTGTTACA
Flanking Amino Acid:
RITRAQSRKQRQLKAEAKKA
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.1
0.79
0.8
79.4
32.6
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
50.6
0.01
2.3
70.62
41.9

Associated Gene:

Gene:
RNF128
Ensembl Gene ID:
ENSAPLG00000014254
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014859
12948538 - 12975224
26687