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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12968809_12969389_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12968809 - 12969389
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACTC
5'SS Class:
major
3'SS Sequence:
TTTGCCACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AGTTGATTAATG
Flanking Amino Acid:
QLRTLKQGDKETGPDGDSCA
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
64.9
39.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
74.6
0.55
0.8
71.7
34.1
Minor 5ss
42
-0.9
3.2
59.4
45.3
Minor BPS
49.8
-0.1
2.1
59.81
42

Associated Gene:

Gene:
RNF128
Ensembl Gene ID:
ENSAPLG00000014254
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014859
12948538 - 12975224
26687