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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12969473_12973032_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12969473 - 12973032
Intron Length:
3560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGAAACATAACT
Flanking Amino Acid:
PNEVVRILTCNHLFHKNCID
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.5
40.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.1
0.61
0.8
70.7
34.8
Minor 5ss
37.7
-1.4
3
50.6
39.9
Minor BPS
52.9
0.17
1.9
73.33
42.2

Associated Gene:

Gene:
RNF128
Ensembl Gene ID:
ENSAPLG00000014254
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014859
12948538 - 12975224
26687