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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12973754_12975108_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12973754 - 12975108
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTGGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGCTTTTTAACT
Flanking Amino Acid:
SVLEEHAPSENDNTHLVNNV
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
67
0.38
1.1
65.3
41.2
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
76.2
0.9
1.1
83.79
37.4

Associated Gene:

Gene:
RNF128
Ensembl Gene ID:
ENSAPLG00000014254
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014859
12948538 - 12975224
26687