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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12990807_12994515_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12990807 - 12994515
Intron Length:
3709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTGTTAATA
Flanking Amino Acid:
DSQVYWSIACGASREEITEH
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
81.4
31.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
42.5
-0.8
2.8
56.3
42.5
Minor BPS
68.4
0.57
2
82.43
32.9

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015040
12982104 - 13016974
34871
ENSAPLT00000031733
12982104 - 13017142
35039