About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12994635_12995237_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12994635 - 12995237
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TATAAAGTAACT
Flanking Amino Acid:
ITSFVQGKIRGLIAEEGKGS
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
75.1
35.1
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
85.1
0.79
0.8
84.6
30.4
Minor 5ss
37.3
-1.4
2.7
42.3
38.4
Minor BPS
46.3
-0.2
2.4
72.68
43.2

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031733
12982104 - 13017142
35039
ENSAPLT00000017589
12982104 - 13016974
34871
ENSAPLT00000015040
12982104 - 13016974
34871