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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12995464_12995955_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12995464 - 12995955
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTGCCTATATT
Flanking Amino Acid:
SFYSFLLGAEIKLIISWDEI
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
49.4
0.04
2.1
71.2
46.2

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031733
12982104 - 13017142
35039
ENSAPLT00000017589
12982104 - 13016974
34871
ENSAPLT00000015040
12982104 - 13016974
34871