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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12999656_13000907_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12999656 - 13000907
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTATGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
SNPQHIISTEVATSSASDSP
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.8
0.54
1.1
76.1
37.1
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017589
12982104 - 13016974
34871
ENSAPLT00000015040
12982104 - 13016974
34871
ENSAPLT00000031733
12982104 - 13017142
35039