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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13003808_13005181_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13003808 - 13005181
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCCT
5'SS Class:
major
3'SS Sequence:
CACTTATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TGTGCAATAACA
Flanking Amino Acid:
LRGELWLLFSGAVNDMASNP
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
61.5
42.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
79.3
0.66
0.9
73
35.9
Minor 5ss
39.5
-1.2
3.3
57.5
46.6
Minor BPS
52.8
0.09
2
70.69
40.9

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017589
12982104 - 13016974
34871
ENSAPLT00000015040
12982104 - 13016974
34871
ENSAPLT00000031733
12982104 - 13017142
35039