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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13005397_13005759_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13005397 - 13005759
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAG
5'SS Class:
major
3'SS Sequence:
TAAAATGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCCTTTTAAAA
Flanking Amino Acid:
YRNPQIGYCQAMNILTSVLL
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
54
44.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.2
0.36
1.1
57.6
46.6
Minor 5ss
28.4
-2.5
3.5
37.7
47.1
Minor BPS
56.2
0.19
1.4
60.98
39.4

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017589
12982104 - 13016974
34871
ENSAPLT00000015040
12982104 - 13016974
34871
ENSAPLT00000031733
12982104 - 13017142
35039