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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13006861_13007942_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13006861 - 13007942
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAGTG
5'SS Class:
major
3'SS Sequence:
TTCCTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GTTTCCTTCACA
Flanking Amino Acid:
DDAEAVTVLNRFFDSVTNKD
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.2
62.5
42.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
76.9
0.61
0.8
72.5
31.3
Minor 5ss
45.7
-0.5
3.2
64.3
47.2
Minor BPS
75.9
0.81
1.7
84.27
35.8

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031733
12982104 - 13017142
35039
ENSAPLT00000017589
12982104 - 13016974
34871
ENSAPLT00000015040
12982104 - 13016974
34871