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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13008073_13011413_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13008073 - 13011413
Intron Length:
3341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATAGAACT
Flanking Amino Acid:
ITDLIRESNERYGDIRYEDV
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80.7
31.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.7
0.76
0.7
80
25.6
Minor 5ss
46.4
-0.4
3.2
66.5
39
Minor BPS
49.4
0.04
1.9
76.85
38.8

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031733
12982104 - 13017142
35039
ENSAPLT00000017589
12982104 - 13016974
34871
ENSAPLT00000015040
12982104 - 13016974
34871