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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13011513_13012644_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13011513 - 13012644
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
TLEATTKQNVLRVVSQDVKF
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
86.8
0.83
0.8
84.8
35.4
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015040
12982104 - 13016974
34871
ENSAPLT00000031733
12982104 - 13017142
35039
ENSAPLT00000017589
12982104 - 13016974
34871