About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13016211_13016563_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13016211 - 13016563
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
GTTATCTGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TGTTCTCTAAAT
Flanking Amino Acid:
NIKDLPRMNQSQFIQFSKTL
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
71
0.47
1
66.1
40.7
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
63.8
0.51
1.8
83.05
37.5

Associated Gene:

Gene:
TBC1D8B
Ensembl Gene ID:
ENSAPLG00000014354
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017589
12982104 - 13016974
34871
ENSAPLT00000015040
12982104 - 13016974
34871
ENSAPLT00000031733
12982104 - 13017142
35039