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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13024669_13025204_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13024669 - 13025204
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TGTCTCCCCACA
Flanking Amino Acid:
QVQQHRLYLQMQSPEAVPGG
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
75.8
0.58
0.8
69.2
31.5
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
42.7
-0.5
2.1
58.52
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776