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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13025413_13025606_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13025413 - 13025606
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCATGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCCTCATGG
Flanking Amino Acid:
TLSGTSRQQGKFVAEQQTLP
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.2
36.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
69.4
0.44
1
65.5
34.7
Minor 5ss
33.1
-1.9
3
43
37.7
Minor BPS
45.3
-0.4
2.1
50.91
49.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776