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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13025700_13026192_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13025700 - 13026192
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACCAT
U12 Branch Point Sequence:
TTTTCCTCCACT
Flanking Amino Acid:
QSNYSQDRSLRMLLDQSIQA
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.7
36.9
Major BPS
50.4
0.01
1.4
60.8
45.4
Major PPT
76.5
0.6
0.8
70.1
29.2
Minor 5ss
32
-2.1
3.6
48.4
47.3
Minor BPS
70.4
0.72
2
92.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776